A way to transform tab delimited to FASTA
#!/bin/bash awk ‘{ seq = $2 l = length(seq) i = 1 printf ">%s\n", $1 while (i <= l){ printf "%s\n", substr(seq,i,80) i=i+80 } }’ "$@"
Tags: AWK, bioinformatics
A way to transform tab delimited to FASTA
#!/bin/bash awk ‘{ seq = $2 l = length(seq) i = 1 printf ">%s\n", $1 while (i <= l){ printf "%s\n", substr(seq,i,80) i=i+80 } }’ "$@"
Tags: AWK, bioinformatics
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